Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Bone

Cell type

Chondrocytes

MeSH Description

Polymorphic cells that form cartilage.

Sample

sample type

in vitro differentiated cells

sex

female

health state

healthy

dev stage

embryonic

age

5 day

donor ID

ENCDO222AAA

lab

Bradley Bernstein, Broad

source

SESCC

cell type

chondrocyte

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

21303309

Reads aligned (%)

98.8

Duplicates removed (%)

19.2

Number of peaks

47875 (qval < 1E-05)

hg19

Number of total reads

21303309

Reads aligned (%)

98.5

Duplicates removed (%)

19.7

Number of peaks

48948 (qval < 1E-05)