Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

sample type
in vitro differentiated cells
sex
female
health state
healthy
dev stage
embryonic
age
5 day
donor ID
ENCDO222AAA
lab
Bradley Bernstein, Broad
source
SESCC
cell type
chondrocyte

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
21303309
Reads aligned (%)
98.8
Duplicates removed (%)
19.2
Number of peaks
47875 (qval < 1E-05)

hg19

Number of total reads
21303309
Reads aligned (%)
98.5
Duplicates removed (%)
19.7
Number of peaks
48948 (qval < 1E-05)

Base call quality data from DBCLS SRA